Index

A

arg_dict() (in module sm.webapp.handlers.feedback)

AuthenticateClient (class in sm.webapp.handlers.auth)

C

calc_metrics() (sm.engine.search_algorithm.SearchAlgorithm method) check_formula_uniqueness() (sm.engine.formulas_segm.FormulasSegm static method) clean_target_decoy_table() (sm.engine.fdr.FDR method) cmd() (in module sm.engine.util)

cmd_check() (in module sm.engine.util) compute_sf_images() (in module sm.engine.msm_basic.formula_imager) (in module sm.engine.msm_basic.formula_imager_segm) compute_sf_peak_images() (in module sm.engine.msm_basic.formula_imager) cookie_name (sm.webapp.handlers.results_table.ResultsTableHandler attribute)

D

db (sm.webapp.handlers.results_table.ResultsTableHandler attribute)

decoy_adduct_selection() (sm.engine.fdr.FDR method)

E

es (sm.webapp.handlers.results_table.ResultsTableHandler attribute)

estimate_fdr() (sm.engine.fdr.FDR method) (sm.engine.search_algorithm.SearchAlgorithm method)

F

fabfile (module) FDR (class in sm.engine.fdr) FeedbackComment (class in sm.webapp.handlers.feedback) FeedbackRating (class in sm.webapp.handlers.feedback)

filter_sf_images() (sm.engine.search_algorithm.SearchAlgorithm method) filter_sf_metrics() (sm.engine.search_algorithm.SearchAlgorithm method) find_mz_segments() (in module sm.engine.msm_basic.formula_imager_segm) FormulasSegm (class in sm.engine.formulas_segm)

G

gen_iso_peak_images() (in module sm.engine.msm_basic.formula_imager_segm) gen_iso_sf_images() (in module sm.engine.msm_basic.formula_imager_segm) get() (sm.webapp.handlers.feedback.FeedbackComment method) (sm.webapp.handlers.feedback.FeedbackRating method) (sm.webapp.handlers.results_table.ResultsTableHandler method) get_conf() (sm.engine.util.SMConfig class method)

get_sf_adduct_peaksn() (sm.engine.formulas_segm.FormulasSegm method) get_sf_adduct_sorted_df() (sm.engine.formulas_segm.FormulasSegm method) get_sf_peak_df() (sm.engine.formulas_segm.FormulasSegm method) get_sf_peak_ints() (sm.engine.formulas_segm.FormulasSegm method)

I

init_logger() (in module sm.engine.util)

initialize() (sm.webapp.handlers.results_table.ResultsTableHandler method)

L

local_path() (in module sm.engine.util)

M

make_datatable_dict() (sm.webapp.handlers.results_table.ResultsTableHandler method)

P

post() (sm.webapp.handlers.auth.AuthenticateClient method) (sm.webapp.handlers.feedback.FeedbackComment method) (sm.webapp.handlers.feedback.FeedbackRating method) (sm.webapp.handlers.results_table.ResultsTableHandler method)

proj_root() (in module sm.engine.util)

R

read_json() (in module sm.engine.util)

ResultsTableHandler (class in sm.webapp.handlers.results_table)

S

s3_path() (in module sm.engine.util) sample_spectra() (in module sm.engine.msm_basic.formula_imager) search() (sm.engine.search_algorithm.SearchAlgorithm method) (sm.webapp.handlers.results_table.ResultsTableHandler method) SearchAlgorithm (class in sm.engine.search_algorithm) set_path() (sm.engine.util.SMConfig class method) sf_peak_gen() (sm.engine.formulas_segm.FormulasSegm static method) sign_in() (sm.webapp.handlers.auth.AuthenticateClient method) sign_out() (sm.webapp.handlers.auth.AuthenticateClient method) sm (module) sm.engine (module) sm.engine.fdr (module) sm.engine.formulas_segm (module) sm.engine.msm_basic (module)

sm.engine.msm_basic.formula_imager (module) sm.engine.msm_basic.formula_imager_segm (module) sm.engine.search_algorithm (module) sm.engine.tests (module) sm.engine.tests.msm_basic (module) sm.engine.util (module) sm.webapp (module) sm.webapp.handlers (module) sm.webapp.handlers.auth (module) sm.webapp.handlers.feedback (module) sm.webapp.handlers.results_table (module) SMConfig (class in sm.engine.util)

U

upsert_feedback() (in module sm.webapp.handlers.feedback)

V

validate_id_token() (sm.webapp.handlers.auth.AuthenticateClient static method)