Index

A | C | D | E | F | G | L | M | P | S | T | U | V

A

arg_dict() (in module sm.webapp.handlers.feedback)
AuthenticateClient (class in sm.webapp.handlers.auth)

C

calc_metrics() (sm.engine.search_algorithm.SearchAlgorithm method)
check_formula_uniqueness() (sm.engine.formulas.Formulas static method)
(sm.engine.formulas_segm.FormulasSegm static method)
cmd() (in module sm.engine.util)
cmd_check() (in module sm.engine.util)
compute_sf_images() (in module sm.engine.msm_basic.formula_imager)
(in module sm.engine.msm_basic.formula_imager_segm)
compute_sf_peak_images() (in module sm.engine.msm_basic.formula_imager)

D

Dataset (class in sm.engine.dataset)
DateTimeEncoder (class in sm.webapp.util)
decoy_adduct_selection() (sm.engine.fdr.FDR method)
default() (sm.webapp.util.DateTimeEncoder method)

E

estimate_fdr() (sm.engine.fdr.FDR method)
(sm.engine.search_algorithm.SearchAlgorithm method)

F

fabfile (module)
FDR (class in sm.engine.fdr)
FeedbackComment (class in sm.webapp.handlers.feedback)
FeedbackRating (class in sm.webapp.handlers.feedback)
filter_sf_images() (sm.engine.search_algorithm.SearchAlgorithm method)
filter_sf_metrics() (sm.engine.search_algorithm.SearchAlgorithm method)
find_mz_segments() (in module sm.engine.msm_basic.formula_imager_segm)
Formulas (class in sm.engine.formulas)
FormulasSegm (class in sm.engine.formulas_segm)

G

gen_iso_peak_images() (in module sm.engine.msm_basic.formula_imager_segm)
gen_iso_sf_images() (in module sm.engine.msm_basic.formula_imager_segm)
get() (sm.webapp.handlers.feedback.FeedbackComment method)
(sm.webapp.handlers.feedback.FeedbackRating method)
get_conf() (sm.engine.util.SMConfig class method)
get_dims() (sm.engine.dataset.Dataset method)
get_norm_img_pixel_inds() (sm.engine.dataset.Dataset method)
get_sf_adduct_peaksn() (sm.engine.formulas.Formulas method)
(sm.engine.formulas_segm.FormulasSegm method)
get_sf_adduct_sorted_df() (sm.engine.formulas_segm.FormulasSegm method)
get_sf_peak_bounds() (sm.engine.formulas.Formulas method)
get_sf_peak_df() (sm.engine.formulas_segm.FormulasSegm method)
get_sf_peak_ints() (sm.engine.formulas.Formulas method)
(sm.engine.formulas_segm.FormulasSegm method)
get_sf_peak_map() (sm.engine.formulas.Formulas method)
get_sf_peaks() (sm.engine.formulas.Formulas method)
get_spectra() (sm.engine.dataset.Dataset method)
globalvars (module)

L

local_path() (in module sm.engine.util)

M

my_print() (in module sm.webapp.util)

P

post() (sm.webapp.handlers.auth.AuthenticateClient method)
(sm.webapp.handlers.feedback.FeedbackComment method)
(sm.webapp.handlers.feedback.FeedbackRating method)
proj_root() (in module sm.engine.util)

S

s3_path() (in module sm.engine.util)
sample_spectra() (in module sm.engine.msm_basic.formula_imager)
save_ds_meta() (sm.engine.dataset.Dataset method)
search() (sm.engine.search_algorithm.SearchAlgorithm method)
SearchAlgorithm (class in sm.engine.search_algorithm)
set_path() (sm.engine.util.SMConfig class method)
sf_peak_gen() (sm.engine.formulas_segm.FormulasSegm static method)
sign_in() (sm.webapp.handlers.auth.AuthenticateClient method)
sign_out() (sm.webapp.handlers.auth.AuthenticateClient method)
sm (module)
sm.engine (module)
sm.engine.dataset (module)
sm.engine.fdr (module)
sm.engine.formulas (module)
sm.engine.formulas_segm (module)
sm.engine.msm_basic (module)
sm.engine.msm_basic.formula_imager (module)
sm.engine.msm_basic.formula_imager_segm (module)
sm.engine.search_algorithm (module)
sm.engine.tests (module)
sm.engine.tests.msm_basic (module)
sm.engine.util (module)
sm.webapp (module)
sm.webapp.globalvars (module)
sm.webapp.handlers (module)
sm.webapp.handlers.auth (module)
sm.webapp.handlers.feedback (module)
sm.webapp.util (module)
SMConfig (class in sm.engine.util)

T

txt_to_spectrum_non_cum() (sm.engine.dataset.Dataset static method)

U

upsert_feedback() (in module sm.webapp.handlers.feedback)

V

validate_id_token() (sm.webapp.handlers.auth.AuthenticateClient static method)