sm.webapp.handlers package

Submodules

sm.webapp.handlers.auth module

User authentication module

class sm.webapp.handlers.auth.AuthenticateClient(application, request, **kwargs)

Bases: tornado.web.RequestHandler

post(*args, **kwargs)

sign_in(id_token)

sign_out()

static validate_id_token(id_token)

sm.webapp.handlers.feedback module

User authentication module

class sm.webapp.handlers.feedback.FeedbackComment(application, request, **kwargs)

Bases: tornado.web.RequestHandler

get(*args, **kwargs)

post(*args, **kwargs)

class sm.webapp.handlers.feedback.FeedbackRating(application, request, **kwargs)

Bases: tornado.web.RequestHandler

get(*args, **kwargs)

post(*args, **kwargs)

sm.webapp.handlers.feedback.arg_dict(args)

sm.webapp.handlers.feedback.upsert_feedback(db, client_id, args)

sm.webapp.handlers.iso_image_gen module

sm.webapp.handlers.misc module

class sm.webapp.handlers.misc.IndexHandler(application, request, **kwargs)

Bases: tornado.web.RequestHandler

Tornado handler for the index page.

get(*args, **kwargs)

class sm.webapp.handlers.misc.MinMaxIntHandler(application, request, **kwargs)

Bases: tornado.web.RequestHandler

MIN_MAX_INT_SEL = 'SELECT min_int, max_int\n FROM iso_image\n WHERE job_id = %s and db_id = %s and sf_id = %s and adduct = %s;'

get(*args, **kwargs)

get_current_user()

class sm.webapp.handlers.misc.SFPeakMZsHandler(application, request, **kwargs)

Bases: tornado.web.RequestHandler

db

get(*args, **kwargs)

class sm.webapp.handlers.misc.SpectrumLineChartHandler(application, request, **kwargs)

Bases: tornado.web.RequestHandler

SAMPLE_INTENS_SQL = 'SELECT pixel_inds, intensities\n FROM iso_image\n WHERE job_id = %s and db_id = %s and sf_id = %s and adduct = %s\n ORDER by peak'

db

get(*args, **kwargs)

static sample_centr_ints_norm(sample_ints_list)

sm.webapp.handlers.misc.dataset_config(db, ds_id)

sm.webapp.handlers.results_table module

class sm.webapp.handlers.results_table.ResultsTableHandler(application, request, **kwargs)

Bases: tornado.web.RequestHandler

cookie_name = 'last_table_args'

db

es

get(*args, **kwargs)

initialize()

make_datatable_dict(draw, count, res)

post(*args, **kwargs)

search(sf='', ds_name='', db_name='', adduct='', comp_name='', comp_id='', mz='', min_msm=0.1, fdr_thr=0.1, orderby='msm', asc=False, offset=0, limit=500)

Module contents